Code
flowPloidy
My R package for analyzing flow cytometry histograms, particularly for assessing genome size and ploidy. Available from the bioconductor repository, and the development version is on github.
R
Tutorial materials I’ve been creating for workshops and courses:
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A guided tour of the R command line interface.
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My tutorial on customizing R’s base graphics plots for publication.
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My HTML5 slide deck introducing a reproducible research workflow using R, markdown and knitr in Rstudio (opens as a webpage; “Save Link As” to download it if you want a local copy).
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My current .Rnw template, for use when producing pdfs via knitr and LaTeX. This is the basis of the graphics tutorial above.
I have a slowly growing repository of R teaching material as well.
Emacs
grass-mode, my Emacs mode for interacting with the GRASS GIS software package. Inspired by ESS.