Code

flowPloidy

My R package for analyzing flow cytometry histograms, particularly for assessing genome size and ploidy. Available from the bioconductor repository, and the development version is on github.

R

Tutorial materials I’ve been creating for workshops and courses:

• A guided tour of the R command line interface.

• My tutorial on customizing R’s base graphics plots for publication.

• My HTML5 slide deck introducing a reproducible research workflow using R, markdown and knitr in Rstudio (opens as a webpage; “Save Link As” to download it if you want a local copy).

• My current .Rnw template, for use when producing pdfs via knitr and LaTeX. This is the basis of the graphics tutorial above.

I have a slowly growing repository of R teaching material as well.

Emacs

grass-mode, my Emacs mode for interacting with the GRASS GIS software package. Inspired by ESS.