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    <title>botany on plantarum.ca</title>
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    <description>Recent content in botany on plantarum.ca</description>
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    <item>
      <title>Bakeapples in June: flowering season update</title>
      <link>https://plantarum.ca/2025/05/23/bakeapple-flowers/</link>
      <pubDate>Fri, 23 May 2025 00:00:00 +0000</pubDate>
      
      <guid>https://plantarum.ca/2025/05/23/bakeapple-flowers/</guid>
      <description>


&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_sunset.jpg&#34; title=&#34;Bakeapple flower, 12 June 2024.&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;Bakeapple flower, 12 June 2024.&lt;/p&gt;
&lt;/div&gt;
&lt;p&gt;In a few short weeks the AAFC bakeapple team will be back in Makkovik to
start another summer of bakeapple research, alongside Inuit Food Systems
Research Technician Marilyn Faulkner, and guides Barry Andersen and Todd
Broomfield. While the berries are still several months away, June is an
important time in the life of an appik.&lt;/p&gt;
&lt;p&gt;Bakeapples form flower buds in late summer, tucked away underground and out
of sight. They mature slowly over the winter. When the ground starts to
warm up in the spring, they’re ready to poke their heads up at last and
grow towards the sun.&lt;/p&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;video src=&#34;https://plantarum.ca/images/bakeappleSprout.mp4&#34; title=&#34;Bakeapple emergence, May-June 2024. Marilyn Faulkner/AAFC.&#34; controls=&#34;&#34;&gt;&lt;a href=&#34;https://plantarum.ca/images/bakeappleSprout.mp4&#34;&gt;&lt;/a&gt;&lt;/video&gt;
&lt;p class=&#34;caption&#34;&gt;Bakeapple emergence, May-June 2024. Marilyn
Faulkner/AAFC.&lt;/p&gt;
&lt;/div&gt;
&lt;p&gt;When the flowers open, we’ll finally learn something they’ve known since
the buds formed last year: whether they’re a boy or a girl! Most other
plants have male and female reproductive structures together in the same
flower (such as redberries and blueberries), or in some cases in different
flowers on the same plant (such as spruce and alders). Bakeapples have
separate male and female plants, and all the flowers on a plant will be the
same sex.&lt;/p&gt;
&lt;p&gt;That might sound strange, because bakeapples only have one flower on a
stem. But what we don’t see above ground is that each of those tiny stems
is attached to an underground rhizome (a horizontal stem just beneath the
surface), and that rhizome can spread for ten meters or more. Which means
that each individual bakeapple stem is just one branch on an underground
bakeapple “tree”.&lt;/p&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_rhizome.jpg&#34; title=&#34;Bakeapple rhizome&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;Bakeapple rhizome&lt;/p&gt;
&lt;/div&gt;
&lt;p&gt;Male bakeapple flowers emerge first, a day or two before the females
open. They also stick around a little longer after the females have
finished flowering. We recognize male flowers by the ring of stamens just
inside the petals, each one topped with a yellow anther. Male flowers
attract insects with a combination of sweet nectar at the center of the
flower; and pollen, released from the anthers. As the flies travel from
flower to flower, they transfer (hopefully!) some of the pollen to female
flowers, enabling them to start developing fruits.&lt;/p&gt;
&lt;!-- ![Male bakeapple flower.](/images/bakeapple_male.jpg &#34;Male bakeapple flower.&#34;) --&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_anthers.png&#34; title=&#34;Male bakeapple flower. Some of the pollen grains have fallen out of the anthers, visible as a yellow powder on the white petals.&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;Male bakeapple flower. Some of the pollen grains have fallen
out of the anthers, visible as a yellow powder on the white
petals.&lt;/p&gt;
&lt;/div&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_pistils.png&#34; title=&#34;Female bakeapple flower. There is a cluster of green pistils in the center of the flower, each topped with a fuzzy stigma that collects pollen off visiting insects.&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;Female bakeapple flower. There is a cluster of green pistils in the
center of the flower, each topped with a fuzzy stigma that collects pollen
off visiting insects.&lt;/p&gt;
&lt;/div&gt;
&lt;p&gt;Female bakeapple flowers also have stamens, but they don’t develop fully or
produce anthers. Instead, they have a cluster of green pistils in the
center of the flower. The pistil contains the reproductive parts of the
female flower. At the top is the stigma, which scrapes pollen grains off
the bodies of visiting flies. When that happens, the pollen grain will
germinate, travel down the tube-like style, and fertilize the ovule (egg)
at the base. The fertilized ovule will then release hormones that tell the
plant it’s ready to make a fruit. If all goes well, 4-6 weeks later we’ll
have a delicious appik to pick.&lt;/p&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_pollinators.png&#34; title=&#34;Pollinators on male bakeapple flowers. *Left:* A syrphid fly. *Right:* An Empidid fly. The flies will use their mouth parts to lap up nectar from the bottom of the flower. They need to climb through the anthers to do so; in the process, pollen grains will get stuck to their bodies.&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;Pollinators on male bakeapple flowers. &lt;em&gt;Left:&lt;/em&gt; A syrphid fly. &lt;em&gt;Right:&lt;/em&gt; An
Empidid fly. The flies will use their mouth parts to lap up nectar from the
bottom of the flower. They need to climb through the anthers to do so; in
the process, pollen grains will get stuck to their
bodies.&lt;/p&gt;
&lt;/div&gt;
&lt;p&gt;If the flowers bloom too early, or there is a late cold snap, they may be
damaged or destroyed by frost. Bakeapple plants are very cold-hardy, but
their flowers are tender.&lt;/p&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_frost.jpg&#34; title=&#34;Frost-damaged female bakeapple flower: note the blackened pistils.&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;Frost-damaged female bakeapple flower: note the blackened
pistils.&lt;/p&gt;
&lt;/div&gt;
&lt;p&gt;When the weather cooperates, and the flies do their job as pollinators, the
fertilized bakeapple starts developing a fruit. The first signs are the
white petals dropping, and then the green sepals close up around the
ovaries. This provides a safe space for the fruit to ripen.&lt;/p&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeappleFlowering.gif&#34; title=&#34;A female bakeapple: pollinated by a fly, dropping its petals and closing up the sepals around the developing fruit.&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;A female bakeapple: pollinated by a fly, dropping its petals and closing up the sepals around the developing fruit.&lt;/p&gt;
&lt;/div&gt;
&lt;p&gt;2025 will be our fourth year studying Makkovik bakeapples. We will
contintue collecting a variety of data on different aspects of bakeapple
biology. All of the methods we use are safe for bakeapples and for people,
and do not interfere with any harvesting. Here are some of the methods we
use to study bakeapples, and the equipment you might see around Makkovik
this summer:&lt;/p&gt;
&lt;ol style=&#34;list-style-type: decimal&#34;&gt;
&lt;li&gt;Flower tagging: we use metal tags to mark individual plants. This allows
us to count how many flowers survive to produce fruit each year.&lt;/li&gt;
&lt;/ol&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_tag.jpg&#34; title=&#34;A bakeapple plant with a labeled copper tag loosely looped around the base of the plant.&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;A bakeapple plant with a labeled copper tag loosely looped around the
base of the plant.&lt;/p&gt;
&lt;/div&gt;
&lt;ol start=&#34;2&#34; style=&#34;list-style-type: decimal&#34;&gt;
&lt;li&gt;Flower transects: we have set stakes to mark out 10 meter transects
(straight lines) that we return to each year. We’ll count all the male
and female flowers on the transect, including how many of the females
have been damaged by frost or insects. When we return in August we’ll
count again, to see how many fruits were produced along each transect.&lt;/li&gt;
&lt;/ol&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_fruitTransect.jpg&#34; title=&#34;Erica and Charlie Mae counting bakeapples along a transect.&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;Erica and Charlie Mae counting bakeapples along a
transect.&lt;/p&gt;
&lt;/div&gt;
&lt;ol start=&#34;3&#34; style=&#34;list-style-type: decimal&#34;&gt;
&lt;li&gt;Time-lapse cameras: we have a set of (mostly) weather-proof cameras that
we focus on freshly opened flowers. They are set to take a photo every
10 minutes during the flowering season, and then every hour until the
fruit ripens. This gives us more information about the timing of
flowering, and how long it takes for a berry to ripen.&lt;/li&gt;
&lt;/ol&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_timelapseCam.jpg&#34; title=&#34;One of our weatherized timelapse cameras (just above the left side of the camera).&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;One of our weatherized timelapse
cameras, pointed at a bakeapple flower (just above the left side of the camera).&lt;/p&gt;
&lt;/div&gt;
&lt;ol start=&#34;4&#34; style=&#34;list-style-type: decimal&#34;&gt;
&lt;li&gt;Temperature loggers: at each of our transects we have air and soil
temperature loggers. We’ll use the data from these instruments to better
understand how temperature influences when the flowers emerge, how long
it takes to produce a fruit, and how extreme heat and cold impact the
plants. At least, that’s what we’re planning to do. We’ve had some
challenges with this equipment. The foxes take great delight in digging
them up and chewing them to pieces!&lt;/li&gt;
&lt;/ol&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_loggers.jpg&#34; title=&#34;Temperature loggers. *Left*: An air temperature logger. We&amp;#39;ve started replacing this older model with a new version that doesn&amp;#39;t have exposed wires. The foxes love to chew on those wires! *Right*: a soil logger. These instruments are buried 6 inches under ground, marked with flagging tape. The flagging tape is very interesting to foxes, though, so we&amp;#39;ve stopped using it.&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;Temperature loggers. &lt;em&gt;Left&lt;/em&gt;: An air temperature logger. We’ve started
replacing this older model with a new version that doesn’t have exposed
wires. The foxes love to chew on those wires! &lt;em&gt;Right&lt;/em&gt;: a soil logger. These
instruments are buried 6 inches under ground, marked with flagging tape.
The flagging tape is very interesting to foxes, though, so we’ve stopped
using it.&lt;/p&gt;
&lt;/div&gt;
&lt;ol start=&#34;5&#34; style=&#34;list-style-type: decimal&#34;&gt;
&lt;li&gt;DNA sampling: we’ve collected leaf samples from some of the sites, and
plan to complete the rest of the sites this year. We extract DNA from
the leaf samples, and do a kind of “fingerprint” analysis. This allows
us to determine how many individual plants are present at each site, and
how closely they are related to each other.&lt;/li&gt;
&lt;/ol&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/dry_hibiscus_leaf.JPG&#34; title=&#34;A leaf tissue sample. We put the leaves in a bag of silica gel crystals in order to dry them out quickly.&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;A leaf tissue sample. We put the leaves in a bag of silica gel crystals
in order to dry them out quickly.&lt;/p&gt;
&lt;/div&gt;
&lt;ol start=&#34;6&#34; style=&#34;list-style-type: decimal&#34;&gt;
&lt;li&gt;Flower netting: new this year, we will be putting mesh bags on a few of
the bakeapple flowers. This will prevent insects from pollinating those
flowers, so we can better understand how the plants respond to
pollination.&lt;/li&gt;
&lt;/ol&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/pollinationbag.jpg&#34; title=&#34;A pollination bag, here being used on a tomato.&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;A pollination bag, here being used on a
tomato.&lt;/p&gt;
&lt;/div&gt;
&lt;ol start=&#34;7&#34; style=&#34;list-style-type: decimal&#34;&gt;
&lt;li&gt;Nutrient sampling: also new this year, we will be collecting leaf and
soil samples, in order to better understand how the sites differ in
terms of soil quality, and to identify which nutrients the plants may be
lacking.&lt;/li&gt;
&lt;/ol&gt;
&lt;p&gt;We’re glad to answer any questions about our work. Please feel free to chat
with us in person, say hello while we’re working on the boardwalk/Makkovik
Hill/Ranger Bight, or get in touch by email. It’s a privilege to be working
in Makkovik and we are grateful to everyone for your kind interest and
support.&lt;/p&gt;
&lt;!-- ![A female bakeapple: pollinated by a fly, dropping its petals and closing --&gt;
&lt;!-- up the sepals around the developing fruit.](/images/bakeappleFlowering.gif --&gt;
&lt;!-- &#34;A female bakeapple: pollinated by a fly, dropping its petals and closing --&gt;
&lt;!-- up the sepals around the developing fruit.&#34;) --&gt;
&lt;!-- - what are we doing --&gt;
&lt;!-- - what have we learned? --&gt;
</description>
    </item>
    
    <item>
      <title>Bakeapple Floral Ecology</title>
      <link>https://plantarum.ca/2025/05/07/bakeapple/</link>
      <pubDate>Wed, 07 May 2025 00:00:00 +0000</pubDate>
      
      <guid>https://plantarum.ca/2025/05/07/bakeapple/</guid>
      <description>


&lt;div id=&#34;floral-bud-initiation-and-sexuality&#34; class=&#34;section level1&#34;&gt;
&lt;h1&gt;Floral bud initiation and sexuality&lt;/h1&gt;
&lt;p&gt;Bakeapples are dioecious, meaning that individual plants are male or
female. Flower development begins in late summer. As the fruits from the
current year’s flowers are ripening up, next year’s flower buds are
developing just below the surface. At this stage, all flowers have female
organs (ovaries), but the male organs of female plants don’t initiate
anthers. Later in the fall the ovaries of male plants will develop ovules.
By spring the development of female organs is suppressed in male plants,
and the flowers that emerge are clearly unisexual
&lt;span class=&#34;citation&#34;&gt;(Martinussen and Junttila, &lt;a href=&#34;#ref-MartinussenJunttila_2002&#34; role=&#34;doc-biblioref&#34;&gt;2002&lt;/a&gt;)&lt;/span&gt;. Hermaphrodite flowers are very rare, and
are highly desireable for breeding programs.&lt;/p&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_bud.JPG&#34; title=&#34;Bakeapple bud, August 10, ca. ten days after fruit ripened.&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;Bakeapple bud, August 10, ca. ten days after fruit
ripened.&lt;/p&gt;
&lt;/div&gt;
&lt;/div&gt;
&lt;div id=&#34;flowering&#34; class=&#34;section level1&#34;&gt;
&lt;h1&gt;Flowering&lt;/h1&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_male.JPG&#34; title=&#34;Male bakeapple flower&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;Male bakeapple flower&lt;/p&gt;
&lt;/div&gt;
&lt;p&gt;Flowering starts early in the spring, and the timing is highly variable
&lt;span class=&#34;citation&#34;&gt;(Brown and McNeil, &lt;a href=&#34;#ref-BrownMcNeil_2009&#34; role=&#34;doc-biblioref&#34;&gt;2009&lt;/a&gt;; Li et al., &lt;a href=&#34;#ref-LiEtAl_2016&#34; role=&#34;doc-biblioref&#34;&gt;2016&lt;/a&gt;)&lt;/span&gt;. In Makkovik (55.1°N, 59.2°W) this can be
from the first week of June until the first week of July, with mid-late
June being usual (pers. obs). Male flowers often appear a few days earlier,
and may be present longer into the summer than female flowers
&lt;span class=&#34;citation&#34;&gt;(Brown and McNeil, &lt;a href=&#34;#ref-BrownMcNeil_2009&#34; role=&#34;doc-biblioref&#34;&gt;2009&lt;/a&gt;)&lt;/span&gt;. The peak bloom period is usually concentrated over a
week at a location.&lt;/p&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_female.JPG&#34; title=&#34;Female bakeapple flower&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;Female bakeapple flower&lt;/p&gt;
&lt;/div&gt;
&lt;p&gt;Individual female flowers usually open for only one or two days before
their petals drop, and sepals close. This indicates successful pollination
and the start of fruit development&lt;span class=&#34;citation&#34;&gt;(Jean and Lapointe, &lt;a href=&#34;#ref-JeanLapointe_2001&#34; role=&#34;doc-biblioref&#34;&gt;2001&lt;/a&gt;; Jones, &lt;a href=&#34;#ref-Jones_2010&#34; role=&#34;doc-biblioref&#34;&gt;2010&lt;/a&gt;)&lt;/span&gt;. There
is limited evidence to suggest that female flowers are only fertile for 36
hours, after which their stigmas are no longer receptive
&lt;span class=&#34;citation&#34;&gt;(Kortesharju, &lt;a href=&#34;#ref-Kortesharju_1993&#34; role=&#34;doc-biblioref&#34;&gt;1993&lt;/a&gt;)&lt;/span&gt;.&lt;/p&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_sepals_up.jpg&#34; title=&#34;Female bakeapple flower, ca 1 week post pollination, sepals up covering developing fruit.&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;Female bakeapple flower, ca 1 week post pollination, sepals up covering
developing fruit.&lt;/p&gt;
&lt;/div&gt;
&lt;p&gt;In cold (near freezing) temperatures, female flowers may stay open for a
week or more (per. obs). However, their viability may suffer. Frost can
cause visible injury to the flowers, most notably blackened ovaries. In
addition, frost (or even near-freezing temperatures) may deprive flowers of
their ability to set fruit without leaving any obvious damage
&lt;span class=&#34;citation&#34;&gt;(Kortesharju, &lt;a href=&#34;#ref-Kortesharju_1995&#34; role=&#34;doc-biblioref&#34;&gt;1995&lt;/a&gt;)&lt;/span&gt;.&lt;/p&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_frost.jpg&#34; title=&#34;Frost-damaged female bakeapple flower: note the blackened pistils.&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;Frost-damaged female bakeapple flower: note the blackened
pistils.&lt;/p&gt;
&lt;/div&gt;
&lt;p&gt;Male flowers don’t have clearly defined growth stages comparable to the
females. They typically last a few days or more before their petals drop,
and the anthers dehisce gradually, releasing pollen over several days
&lt;span class=&#34;citation&#34;&gt;(Brown and McNeil, &lt;a href=&#34;#ref-BrownMcNeil_2009&#34; role=&#34;doc-biblioref&#34;&gt;2009&lt;/a&gt;)&lt;/span&gt;.&lt;/p&gt;
&lt;/div&gt;
&lt;div id=&#34;pollinators&#34; class=&#34;section level1&#34;&gt;
&lt;h1&gt;Pollinators&lt;/h1&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_pollinators.png&#34; title=&#34;Pollinators on male bakeapple flowers. *Left:* A syrphid fly. *Right:* An Empidid fly&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;Pollinators on male bakeapple flowers. &lt;em&gt;Left:&lt;/em&gt; A syrphid fly. &lt;em&gt;Right:&lt;/em&gt; An
Empidid fly&lt;/p&gt;
&lt;/div&gt;
&lt;p&gt;The most important pollinators are muscid and syrphid flies. Bumblebees and
halictid bees are rarer pollinators, and less constant (i.e., visit a wider
variety of species). However, the value of bees is increased by their
capacity to remain active in colder conditions, and to travel further in
their foraging &lt;span class=&#34;citation&#34;&gt;(Brown and McNeil, &lt;a href=&#34;#ref-BrownMcNeil_2009&#34; role=&#34;doc-biblioref&#34;&gt;2009&lt;/a&gt;)&lt;/span&gt;. It is widely reported that female
bakeapple flowers do not produce nectar &lt;span class=&#34;citation&#34;&gt;(e.g., Taylor, &lt;a href=&#34;#ref-Taylor_1971&#34; role=&#34;doc-biblioref&#34;&gt;1971&lt;/a&gt;, citing Jensen
1922)&lt;/span&gt;; however, &lt;span class=&#34;citation&#34;&gt;Brown and McNeil (&lt;a href=&#34;#ref-BrownMcNeil_2009&#34; role=&#34;doc-biblioref&#34;&gt;2009&lt;/a&gt;)&lt;/span&gt; found that nectar production was variable
among years, and in some cases females produce more than males. Male
flowers did receive more visits from pollinators, possibly as a consequence
of having larger petals (and they are more likely to have five petals,
rather than four, than female flowers). They noted that a single visit from
a muscid or syrphid resulted in fruit set in 76% and 92% of cases,
respectively.&lt;/p&gt;
&lt;/div&gt;
&lt;div id=&#34;fruit-development&#34; class=&#34;section level1&#34;&gt;
&lt;h1&gt;Fruit Development&lt;/h1&gt;
&lt;p&gt;Berry ripening takes 30-45 days, and is highly influenced by temperature
&lt;span class=&#34;citation&#34;&gt;(Kortesharju, &lt;a href=&#34;#ref-Kortesharju_1993&#34; role=&#34;doc-biblioref&#34;&gt;1993&lt;/a&gt;)&lt;/span&gt;. The same study found local adaptation among
populations for ripening time, with populations in northern/colder
locations ripening faster than southern populations. Pollination rate also
influences ripening speed. Flowers with fewer than 9 fertilized ovules
ripened more slowly (up to five days longer), presumably as a consequence
of reduced hormone levels in the aggregate fruit &lt;span class=&#34;citation&#34;&gt;(Kortesharju, &lt;a href=&#34;#ref-Kortesharju_1993&#34; role=&#34;doc-biblioref&#34;&gt;1993&lt;/a&gt;)&lt;/span&gt;.&lt;/p&gt;
&lt;p&gt;Berries are also susceptible to frost damage &lt;span class=&#34;citation&#34;&gt;(Kortesharju, &lt;a href=&#34;#ref-Kortesharju_1995&#34; role=&#34;doc-biblioref&#34;&gt;1995&lt;/a&gt;)&lt;/span&gt;, although
they become hardier as they mature.&lt;/p&gt;
&lt;p&gt;Note that different researchers have used different indicators of the start
and end of the ripening period: flowers open/petals off/sepals up, berries
loose/sepals down. This could alter the measured duration by 2-4 days
between studies.&lt;/p&gt;
&lt;p&gt;The developing berries gradually push the closed sepals apart as they grow.
When they are fully ripe the sepals reflex. This happens over the course of
single day.&lt;/p&gt;
&lt;div class=&#34;figure&#34;&gt;
&lt;img src=&#34;https://plantarum.ca/images/bakeapple_sepals_down.jpg&#34; title=&#34;Ripe bakeapple flower with the sepals fully reflexed.&#34; alt=&#34;&#34; /&gt;
&lt;p class=&#34;caption&#34;&gt;Ripe bakeapple flower with the sepals fully
reflexed.&lt;/p&gt;
&lt;/div&gt;
&lt;div id=&#34;references&#34; class=&#34;section level2 unnumbered&#34;&gt;
&lt;h2&gt;References&lt;/h2&gt;
&lt;div id=&#34;refs&#34; class=&#34;references hanging-indent&#34;&gt;
&lt;div id=&#34;ref-BrownMcNeil_2009&#34;&gt;
&lt;p&gt;Brown, A. O., and J. N. McNeil. 2009. Pollination ecology of the high latitude, dioecious cloudberry (&lt;em&gt;Rubus&lt;/em&gt; &lt;em&gt;Chamaemorus&lt;/em&gt;; Rosaceae). &lt;em&gt;American Journal of Botany&lt;/em&gt; 96: 1096–1107.&lt;/p&gt;
&lt;/div&gt;
&lt;div id=&#34;ref-JeanLapointe_2001&#34;&gt;
&lt;p&gt;Jean, D., and L. Lapointe. 2001. Limited carbohydrate availability as a potential cause of fruit abortion in &lt;em&gt;Rubus&lt;/em&gt; &lt;em&gt;Chamaemorus&lt;/em&gt;. &lt;em&gt;Physiologia Plantarum&lt;/em&gt; 112: 379–387.&lt;/p&gt;
&lt;/div&gt;
&lt;div id=&#34;ref-Jones_2010&#34;&gt;
&lt;p&gt;Jones, A. 2010. Plants That We Eat: Nauriat Nigiñaqtaut - From the traditional wisdom of the Iñupiat Elders of Northwest Alaska. 2nd ed. University of Alaska Press, Fairbanks.&lt;/p&gt;
&lt;/div&gt;
&lt;div id=&#34;ref-Kortesharju_1993&#34;&gt;
&lt;p&gt;Kortesharju, J. 1993. Ecological factors affecting the ripening time of cloudberry (&lt;em&gt;Rubus&lt;/em&gt; &lt;em&gt;Chamaemorus&lt;/em&gt;) fruit under cultivation conditions. &lt;em&gt;Annales Botanici Fennici&lt;/em&gt; 30: 263–274.&lt;/p&gt;
&lt;/div&gt;
&lt;div id=&#34;ref-Kortesharju_1995&#34;&gt;
&lt;p&gt;Kortesharju, J. 1995. Effects of frost on the female flowers, unripe fruits and vegetative growth of the cloudberry (&lt;em&gt;Rubus&lt;/em&gt; &lt;em&gt;Chamaemorus&lt;/em&gt;) in Finnish Lapland. &lt;em&gt;Aquilo. Ser. Botanica&lt;/em&gt; 35: 31–38.&lt;/p&gt;
&lt;/div&gt;
&lt;div id=&#34;ref-LiEtAl_2016&#34;&gt;
&lt;p&gt;Li, J., D. Percival, J. Hoyle, J. White, K. Head, and K. Pruski. 2016. Phenology and yield of native fruits cloudberry/bakeapple (&lt;em&gt;Rubus&lt;/em&gt; &lt;em&gt;Chamaemorus&lt;/em&gt; L.) And lingonberry/partridgeberry (&lt;em&gt;Vaccinium&lt;/em&gt; &lt;em&gt;Vitis-Idaea&lt;/em&gt; L.) Grown in Southern Labrador, Canada M. T. Charles [ed.], &lt;em&gt;Canadian Journal of Plant Science&lt;/em&gt; 96: 329–338.&lt;/p&gt;
&lt;/div&gt;
&lt;div id=&#34;ref-MartinussenJunttila_2002&#34;&gt;
&lt;p&gt;Martinussen, and Junttila. 2002. Flower Development in Cloudberry (&lt;em&gt;Rubus&lt;/em&gt; &lt;em&gt;Chamaemorus&lt;/em&gt; L.). &lt;em&gt;Acta Hort&lt;/em&gt;.&lt;/p&gt;
&lt;/div&gt;
&lt;div id=&#34;ref-Taylor_1971&#34;&gt;
&lt;p&gt;Taylor, K. 1971. Rubus Chamaemorus L. &lt;em&gt;Journal of Ecology&lt;/em&gt; 59: 293–306.&lt;/p&gt;
&lt;/div&gt;
&lt;/div&gt;
&lt;/div&gt;
&lt;/div&gt;
</description>
    </item>
    
    <item>
      <title>Research Permits for the City of Ottawa</title>
      <link>https://plantarum.ca/2023/04/12/ottawa_permits/</link>
      <pubDate>Wed, 12 Apr 2023 00:00:00 +0000</pubDate>
      
      <guid>https://plantarum.ca/2023/04/12/ottawa_permits/</guid>
      <description>&lt;h1 id=&#34;the-city-of-ottawa-owns-a-lot-of-natural-areas&#34;&gt;The City of Ottawa Owns a Lot of Natural Areas&lt;/h1&gt;
&lt;p&gt;If you&amp;rsquo;re looking to do field work around Ottawa, you might be surprised
how much natural land is owned by the City. You can see for yourself using
the &lt;a href=&#34;https://maps.ottawa.ca/geoottawa/&#34;&gt;geottawa browser&lt;/a&gt;.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;./ottawa_natural_areas.jpg&#34; alt=&#34;A screenshot of the GeoOttawa map browser, showing public lands around Ottawa&#34;&gt;&lt;/p&gt;
&lt;p&gt;The City website includes descriptions of some of the &lt;a href=&#34;https://ottawa.ca/en/living-ottawa/environment-conservation-and-climate/conservation-areas#&#34;&gt;larger conservation
areas&lt;/a&gt;.&lt;/p&gt;
&lt;h1 id=&#34;how-to-get-a-permit&#34;&gt;How to Get a Permit&lt;/h1&gt;
&lt;p&gt;I couldn&amp;rsquo;t find a link on the City website, but was directed to one of the
City biologists by a colleague in another agency. As she explained, formal
approvals come from the Real Estate team, with direction from the
biologists when the permit involves natural areas. The current requirements
are:&lt;/p&gt;
&lt;ul&gt;
&lt;li&gt;An administrative fee (fee may change each year)&lt;/li&gt;
&lt;li&gt;A security deposit required, depending on the nature of the
work.&lt;/li&gt;
&lt;li&gt;Certificate of insurance, naming the City as additional insured.&lt;/li&gt;
&lt;li&gt;Who your signing authority will be on the agreement and their position.&lt;/li&gt;
&lt;li&gt;The anticipated start and end date of your study.&lt;/li&gt;
&lt;li&gt;An overview of the project, including equipment to be used.&lt;/li&gt;
&lt;li&gt;A map showing the study&amp;rsquo;s intended sampling location(s) (may be just
property parcels, as listed in
&lt;a href=&#34;https://maps.ottawa.ca/geoottawa/&#34;&gt;geottawa&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;Your first point of contact for this should be
&lt;code&gt;leasing-location@ottawa.ca&lt;/code&gt;. Expect the process to take at least two
months, so start early.&lt;/p&gt;
&lt;h2 id=&#34;permits-arent-always-necessary&#34;&gt;Permits Aren&amp;rsquo;t Always Necessary&lt;/h2&gt;
&lt;p&gt;Projects that involve work that doesn&amp;rsquo;t differ from regular
recreational use of the properties &lt;em&gt;may&lt;/em&gt; not require a permit. If you can
record your data from public trails without any special equipment or
specimen collection, you might be able to proceed without a permit. That&amp;rsquo;s
up to the City of course, so check with them.&lt;/p&gt;
&lt;h1 id=&#34;caveat&#34;&gt;Caveat&lt;/h1&gt;
&lt;p&gt;I don&amp;rsquo;t work for the City, and this summary is based on my personal
experience in 2023. It may change in future (or be inaccurate now), and may
differ based on the details of your project.&lt;/p&gt;
</description>
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    <item>
      <title>Keys to the Sedges of Ontario, Updated</title>
      <link>https://plantarum.ca/2016/08/13/keys-to-the-sedges-of-ontario-updated/</link>
      <pubDate>Sat, 13 Aug 2016 00:00:00 +0000</pubDate>
      
      <guid>https://plantarum.ca/2016/08/13/keys-to-the-sedges-of-ontario-updated/</guid>
      <description>&lt;p&gt;A few years ago I wrote a little webscraper to collect taxonomic treatments from the &lt;a href=&#34;www.fna.org&#34;&gt;Flora of North America&lt;/a&gt; website. There were a few problems with the last version, as the webpages on the FNA site have some inconsistencies that my code didn&amp;rsquo;t handle. Checking the key against the list maintained by the &lt;a href=&#34;https://www.ontario.ca/page/get-natural-heritage-information&#34;&gt;Natural Heritage Information Center&lt;/a&gt;, there were about 25 species missing, plus the entire genus &lt;em&gt;Cyperus&lt;/em&gt;. I added the missing species, so the key should now be complete. It&amp;rsquo;s available on my &lt;a href=&#34;http://plantarum.ca/botany/&#34;&gt;botany page&lt;/a&gt;. The source files are available on my &lt;a href=&#34;https://bitbucket.org/tws/onsedges&#34;&gt;bitbucket account&lt;/a&gt;.&lt;/p&gt;
&lt;h2 id=&#34;references&#34;&gt;References&lt;/h2&gt;
&lt;p&gt;Ball, Peter W., Reznicek, A. A., and Murray, David F. 2002. Flora of North America. Volume 23: Cyperaceae. Oxford University Press.&lt;/p&gt;
</description>
    </item>
    
    <item>
      <title>Preserving Leaf Tissue for DNA Analysis</title>
      <link>https://plantarum.ca/2015/01/31/preserving-leaf-tissue-for-dna-analysis/</link>
      <pubDate>Sat, 31 Jan 2015 00:00:00 +0000</pubDate>
      
      <guid>https://plantarum.ca/2015/01/31/preserving-leaf-tissue-for-dna-analysis/</guid>
      <description>&lt;blockquote&gt;
&lt;p&gt;UPDATE 2015-02-01: Additional tips from Kathryn Turner added below!&lt;/p&gt;
&lt;/blockquote&gt;
&lt;p&gt;Collecting high-quality DNA is the first, critical step in any genetic study. Working with fresh material is usually the best option. Second choice would go to leaves that were frozen immediately after collection. However, this is difficult to manage on extended field trips. This makes silica gel the preservative of choice for most botanists working away from the greenhouse. In this post I&amp;rsquo;ll provide a few pointers for how best to use it.&lt;/p&gt;
&lt;h2 id=&#34;the-problem&#34;&gt;The problem&lt;/h2&gt;
&lt;p&gt;DNA is actually a relatively stable molecule. While it should be stored in the freezer, extracted DNA accidentally left at room temperature over a weekend is unlikely to degrade.&lt;/p&gt;
&lt;p&gt;However, in the normal course of cell functioning, DNA is constantly being split apart, translated and otherwise manipulated. In living tissue, this is carefully regulated by enyzmes, within different membrane-bounded areas of the cell. When the tissues are damaged, as when a leaf is collected, the integrity of the cell is compromised, and the DNA is exposed to a slurry of enzymes and other chemicals that will quickly break it down beyond use to a biologist.&lt;/p&gt;
&lt;p&gt;There are two ways to prevent this breakdown: freezing and desiccation. Given that freezing is rarely an option in the field, that leaves drying. If we use a plant press, it can take a week or more for the leaves to dry completely. This is too slow to preserve the DNA. Drying a press over a heater of some kind is better, and DNA can be extracted from well-dried herbarium specimens for some applications.&lt;/p&gt;
&lt;p&gt;For particularly sensitive methods, such as AFLPs or microsatellites, or if you need higher quantities of intact DNA, a better method is necessary. That&amp;rsquo;s where silica gel comes in. It&amp;rsquo;s cheap, easy to handle, and most important can dry a leaf sample in 12-24 hours, fast enough to preserve enough high-quality DNA for most applications.&lt;/p&gt;
&lt;h2 id=&#34;what-is-silica-gel&#34;&gt;What is silica gel?&lt;/h2&gt;
&lt;p&gt;Silica gel is a white, orange or blue crystal, packaged as dust-sized powder or larger beads up to 5 mm across. The crystals have a high capacity for absorbing moisture. We most frequently encounter silica gel when we buy electronics &amp;mdash; the little packets in the packages with the &amp;ldquo;do not eat&amp;rdquo; warnings are silica gel. If one of the packets gets split when you open the package, you&amp;rsquo;ll see the actual crystals rolling around in the box.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;https://plantarum.ca/images/Indicating-silica-gel.png&#34; alt=&#34;Silica Gel, XtremXpert CC BY-SA 3.0&#34; title=&#34;Indicating Silica Gel&#34;&gt;&lt;/p&gt;
&lt;p&gt;Silica gel can be purchased in &amp;ldquo;indicating&amp;rdquo; or &amp;ldquo;non-indicating&amp;rdquo; forms. The indicating forms have a dye added to some of the crystals. The dye changes colour as the amount of moisture absorbed by the gel increases. The most frequently used dyes are cobalt chloride, which is blue when dry, changing to pink as it absorbs water; and methyl violet, which is orange when dry, changing to green.&lt;/p&gt;
&lt;h2 id=&#34;is-it-safe&#34;&gt;Is it safe?&lt;/h2&gt;
&lt;p&gt;There are no serious dangers of handling silica gel. However, it may irritate your eyes, lungs or digestive tract (remember not to eat it!). Note, though, that silica in the form of silica gel does not cause silicosis.&lt;/p&gt;
&lt;p&gt;There is some risk associated with the indicator dyes added to some silica gels. Cobalt chloride has been classified as a carcinogen in Europe; methyl violet is offered as a safer alternative.&lt;/p&gt;
&lt;p&gt;Given these considerations, my preference is to use larger (2-4 mm beads) indicating orange silica gel crystals. The dust size gel &lt;em&gt;may&lt;/em&gt; dry slightly faster, but it&amp;rsquo;s impossible not to inhale it when you handle it. It can take a few days to cough that dust back out. The larger beads are much more pleasant to handle, and I&amp;rsquo;ve yet to inhale one. The orange coloured beads use the safer methyl violet indicator.&lt;/p&gt;
&lt;h2 id=&#34;how-do-you-use-it&#34;&gt;How do you use it?&lt;/h2&gt;
&lt;p&gt;Let&amp;rsquo;s work back from our extraction. Most extraction kits use 20 µg of leaf tissue.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;https://plantarum.ca/images/20ug_leaf.JPG&#34; alt=&#34;20µg of dried Rubus leaf tissue&#34; title=&#34;20µg of dried Rubus leaf tissue&#34;&gt;&lt;/p&gt;
&lt;p&gt;That&amp;rsquo;s about a 4 cm&lt;sup&gt;2&lt;/sup&gt;. Flow cytometry requires about the same
amount of issue, and I like to collect at least enough tissue for two
extractions and two flow runs. A single hibiscus leaf provides sufficient
tissue.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;https://plantarum.ca/images/hibiscus_leaf.JPG&#34; alt=&#34;1.3 gm of fresh Hibiscus leaf tissue and 30 gm of silica gel&#34; title=&#34;20µg of dried Rubus leaf tissue&#34;&gt;&lt;/p&gt;
&lt;p&gt;This leaf weighs in at about 1.3 gm fresh. As a rule, you should have at least 10 times more silica by weight than the tissue you want to dry. I pre-fill my silica bags with 30 gm of crystals, so that should be ok for this leaf. Note that 30 gm = 30-40 ml of crystals; we measure them out by volume, not weight.&lt;/p&gt;
&lt;p&gt;To increase drying speed, rip the leaf up into pieces. Place it in the bag and shake it around, so that the leaf surfaces have good contact with the beads. Avoid getting big clumps of leaves - the inner surfaces won&amp;rsquo;t dry well. Push the air out of the bag and seal it tight. Throw it inside a second bag for extra safety, label it and place it somewhere safe.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;https://plantarum.ca/images/packaged_leaf.JPG&#34; alt=&#34;Hibiscus leaf tissue packaged for drying&#34; title=&#34;Hibiscus leaf tissue packaged for drying&#34;&gt;&lt;/p&gt;
&lt;p&gt;Twelve to twenty-four hours later, your leaf should be completely dry.&lt;/p&gt;
&lt;h2 id=&#34;how-do-you-know-it-worked&#34;&gt;How do you know it worked?&lt;/h2&gt;
&lt;p&gt;A properly dried leaf will snap when you try to bend it. The colour may have faded slightly, but it should still be green. Some of the beads may have shifted colour a little.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;https://plantarum.ca/images/dry_hibiscus_leaf.JPG&#34; alt=&#34;Dried Hibiscus. The colour faded only slightly, and the brittle tissue snaps rather than bends. Note the little bits of leaf in the bag: it would not be possible to reuse these crystals without risking contamination. &#34; title=&#34;Dried *Hibiscus*. The colour faded only slightly, and the brittle tissue snaps rather than bends. Note the little bits of leaf in the bag: it would not be possible to reuse these crystals without risking contamination.&#34;&gt;&lt;/p&gt;
&lt;h2 id=&#34;warning-signs&#34;&gt;Warning signs&lt;/h2&gt;
&lt;p&gt;If the leaves have turned brown, or many of the indicator beads have
shifted colour, you should use more beads or less tissue.&lt;/p&gt;
&lt;h2 id=&#34;reusing-crystals&#34;&gt;Reusing crystals&lt;/h2&gt;
&lt;p&gt;After the tissue is dried, you can remove most of the crystals. If you used 30 gm to dry your tissues, 10 gm should be enough to keep it dry.&lt;/p&gt;
&lt;p&gt;You can reuse the crystals, if you&amp;rsquo;re careful, and depending on the tissue you&amp;rsquo;re collecting. &lt;em&gt;Carex&lt;/em&gt; leaves are pretty tough, and it&amp;rsquo;s not hard to pour off the crystals leaving all the leaves in the bag. On the other hand, &lt;em&gt;Rubus&lt;/em&gt; leaves break into tiny pieces, and the risk of contamination in reused crystals is too great to bother with it.&lt;/p&gt;
&lt;blockquote&gt;
&lt;p&gt;UPDATE: A tip from Kathryn Turner to keep your leaf bits from
contaminating the silica crystals [NB: link to original tweet now borked,
thanks to Elon]&lt;/p&gt;
&lt;/blockquote&gt;
&lt;!-- &lt; tweet user=&#34;KTInvasion&#34; id=&#34;561695208350306304&#34; &gt; --&gt;
&lt;p&gt;Kathryn&amp;rsquo;s approach is to use one large tub or bag of silica, and place an the samples from entire population (each in a paper envelope) into it. This would allow you to leave the silica in the car, and just carry envelopes into the field. A short time (up to a few hours) between collection and storage doesn&amp;rsquo;t seem to impact tissue quality, at least for sedges. My supervisor now prefers to wait until the evening to put her &lt;em&gt;Carex&lt;/em&gt; leaf samples on silica.&lt;/p&gt;
&lt;p&gt;If you are reusing crystals, or if you have purchased crystals that were already showing their &amp;ldquo;wet&amp;rdquo; colour, you can recharge them. The easiest way is to bake them in a pan at 200°F until the colour changes back. This usually takes a couple of hours, longer if you&amp;rsquo;re using deep pans. If you&amp;rsquo;re in a bind, you can pan-fry them over a camp stove &amp;mdash; keep the pan well above the flame, and keep them moving. This is, however, a sub-optimal way to spend your field time!&lt;/p&gt;
&lt;h2 id=&#34;where-to-get-them&#34;&gt;Where to get them&lt;/h2&gt;
&lt;p&gt;Craft stores such as Michael&amp;rsquo;s often carry silica gel, which is used to make dried flower arrangements. This is usually the white dust with cobalt chloride variety though. When I set up my current lab, I bought a bulk quantity of orange indicating beads from &lt;a href=&#34;http://www.silicagelpackets.com/&#34;&gt;www.silicalgelpackates.com&lt;/a&gt;.&lt;/p&gt;
&lt;h2 id=&#34;references&#34;&gt;References&lt;/h2&gt;
&lt;p&gt;Chase, M. W. and Hills, H. H. 1991. Silica gel: an ideal material for field preservation of leaf samples for DNA studies. Taxon: 2015&amp;ndash;220.&lt;/p&gt;
</description>
    </item>
    
    <item>
      <title>Preparing Rubus samples for herbarium study</title>
      <link>https://plantarum.ca/2013/08/25/rubus-herbarium/</link>
      <pubDate>Sun, 25 Aug 2013 00:00:00 +0000</pubDate>
      
      <guid>https://plantarum.ca/2013/08/25/rubus-herbarium/</guid>
      <description>&lt;p&gt;Collecting blackberries and their relatives (&lt;em&gt;Rubus&lt;/em&gt; spp.) for herbarium
study is particularly challenging, and even experienced field-botanists may
not appreciate everything that is involved. More than in other vascular
plant groups, to make a good &lt;em&gt;Rubus&lt;/em&gt; specimens, you need to understand a
bit about the their life-cycle.&lt;/p&gt;
&lt;figure&gt;
    &lt;img src=&#34;assets/TWS3673-web.jpg&#34;
         alt=&#34;A single Rubus allegheniensis specimen, with the first-year primocane on the right, the second-year floricane on the left, and my expert Rubus presser Charlotte in the middle. Note that the primocane is unbranched, while the floricane has many flowering branches&#34; width=&#34;100%&#34;/&gt; &lt;figcaption&gt;
            &lt;p&gt;A single &lt;em&gt;Rubus allegheniensis&lt;/em&gt; specimen, with the first-year primocane on the right, the second-year floricane on the left, and my expert &lt;em&gt;Rubus&lt;/em&gt; presser Charlotte in the middle. Note that the primocane is unbranched, while the floricane has many flowering branches&lt;/p&gt;
        &lt;/figcaption&gt;
&lt;/figure&gt;

&lt;p&gt;Blackberries, and most other &lt;em&gt;Rubus&lt;/em&gt;, are perennial shrubs. However, their
stems, called canes, are biennial. In the first year of growth a cane
remains in a vegetative state, and does not flower. Usually, it doesn&amp;rsquo;t
even form any side branches. These canes are referred to as &lt;strong&gt;primocanes&lt;/strong&gt;.
At the end of the season, buds form in the leaf axils and at the shoot tip.&lt;/p&gt;
&lt;p&gt;In the second year of growth, flowering shoots will emerge from these buds.
At this stage, the cane is called a &lt;strong&gt;floricane&lt;/strong&gt;. Growth stops after the
fruits are formed; the floricane doesn&amp;rsquo;t produce any over-wintering buds.&lt;/p&gt;
&lt;p&gt;A mature blackberry plant produces both primocanes and floricanes at the
same time. The floricanes start earlier in the season, since they get a
head-start building from last year&amp;rsquo;s primocanes. By the time the flowers
appear in June or early July, the next batch of primocanes are only just
beginning to emerge from the underground rhizome.&lt;/p&gt;
&lt;p&gt;Unlike other angiosperms, blackberry flowers aren&amp;rsquo;t generally useful
taxonomically&lt;sup id=&#34;fnref:1&#34;&gt;&lt;a href=&#34;#fn:1&#34; class=&#34;footnote-ref&#34; role=&#34;doc-noteref&#34;&gt;1&lt;/a&gt;&lt;/sup&gt;. The really interesting characters are the primocane
leaves, the stem armature (prickles, bristles, hairs and glands) and the
mature inflorescences of the floricane. This means the best time to collect
specimens is later in the season, when the fruits are forming or ripe and
the primocanes are well developed.&lt;/p&gt;
&lt;ol&gt;
&lt;li&gt;
&lt;p&gt;First, confirm that you are collecting both a floricane and a primocane,
and they both come from the same rootstock. This is important, as we&amp;rsquo;ve
seen a lot of mixed populations!&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;assets/TWS3669-web.jpg&#34; alt=&#34;Rubus rhizome, confirming the primocane and floricane are part ofthe same plant. The upper cane is the primocane, and the lower one isthe floricane. Primocanes are usually green, and floricanes usually red.This can vary though!&#34; title=&#34;The base of two *Rubus*
canes, with the soil uncovered, showing that they are indeed part of the
same plant.&#34;&gt;&lt;/p&gt;
&lt;/li&gt;
&lt;li&gt;
&lt;p&gt;You make at least two separate sheets for each plant. For the first,
select a representative section of the cane from the central part of the
primocane, with a few well-formed mature leaves attached. The cane tips
are easily damaged, and don&amp;rsquo;t generally press well. Similarly, the
leaves at the base of the cane are often damaged or misshapen.&lt;/p&gt;
&lt;p&gt;Pressing the leaves is tricky, particularly on prickly specimens. Keep
in mind that on the mounted sheet you will want to see the intact
outline of a complete leaf, as well as examples of the upper and lower
surface of the leaves.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;assets/TWS3675-web.jpg&#34; alt=&#34;Preparing a herbarium sheet from a Rubus primocane. Note there aretwo well-formed leaves, and we&amp;rsquo;re pressing them so that both upper andlower surfaces will be visible.&#34; title=&#34;Two *Rubus*
leaves, connected to the same stem, laid flat in a herbarium press&#34;&gt;&lt;/p&gt;
&lt;/li&gt;
&lt;li&gt;
&lt;p&gt;Make sure the specimen includes a nice segment of the most heavily-armed
section of the stem. Sometimes the best leaves and the nastiest prickles
are on different sections of the stem. If this is the case, include a
section of the prickliest part of the stem, with the leaves removed, in
your sample.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;assets/TWS3664-web.jpg&#34; alt=&#34;Include a section of the prickliest part of the cane in yourcollection&#34; title=&#34;A close up of a *Rubus* cane,
showing the large prickles and glandular hairs.&#34;&gt;&lt;/p&gt;
&lt;/li&gt;
&lt;li&gt;
&lt;p&gt;Use a second sheet, with a separate newsprint folder, for the floricane.
Get a section of the stem with two or three well-formed inflorescence
branches. Again, the little shoots at the very top or bottom of the cane
are often misshapen, so use the center of the cane. As for the
primocane, make sure you&amp;rsquo;ve got a section of the prickliest cane.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;assets/TWS3678-web.jpg&#34; alt=&#34;Preparing a Rubus floricane sheet&#34; title=&#34;A *Rubus*
cane, showing the flowering branches, laid flat in a herbarium press.&#34;&gt;&lt;/p&gt;
&lt;p&gt;Floricane leaves are incredibly variable. If you can include a few
well-formed leaves in the folder, great. They don&amp;rsquo;t get much attention
taxonomically, though, due in large part to their inconstancy.&lt;/p&gt;
&lt;/li&gt;
&lt;li&gt;
&lt;p&gt;If you&amp;rsquo;re collecting tissue for DNA work, the freshly-formed leaves at
the end of the primocane are the best source. I had some bad experiences
as a grad student, and so I collect enough for at least four
extractions, and four flow cytometry analyses. Typically 50-100
cm&lt;sup&gt;2&lt;/sup&gt;. Double-bagged, with labels inside and out in case of
catastrophe.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;assets/TWS3678-web.jpg&#34; alt=&#34;Preparing a sample of Rubus leaf tissue for drying insilica&#34; title=&#34;Two *Rubus* leaves, and a ziplock bag
full of orange silica crystals.&#34;&gt;&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;assets/TWS3685-web.jpg&#34; alt=&#34;Preparing a sample of Rubus leaf tissue for drying insilica&#34; title=&#34;Two *Rubus* leaves, broken into pieces,
inside the ziplock bag with full of orange silica crystals. The inner
bag is inside a larger ziplock, and a label is written on the bag in
black marker, and on a paper slip visible inside the bag.&#34;&gt;&lt;/p&gt;
&lt;/li&gt;
&lt;li&gt;
&lt;p&gt;Finally, make sure you note the habit of the plant for the label. The
major growth forms include:&lt;/p&gt;
&lt;ul&gt;
&lt;li&gt;highbush blackberries, with upright, ascending, or somewhat arching stems
that don&amp;rsquo;t reach the ground and don&amp;rsquo;t root at the tip&lt;/li&gt;
&lt;li&gt;doming forms, that start out upright, but arch and may or may not root at
the tips, possibly trailing along the ground as well&lt;/li&gt;
&lt;li&gt;trailing forms, which may either grow prostrate on the ground, or trail
and scramble over other low vegetation&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;Do your best to describe what you see. It can be challenging to
determine if you&amp;rsquo;re looking at a trailing form, or a highbush form that
is now growing on the ground after having been weighed down by snow or
fallen branches. And some highbush species will look strange and
stunted when growing in poor conditions.&lt;/p&gt;
&lt;/li&gt;
&lt;/ol&gt;
&lt;p&gt;The shape of the inflorescence should be visible on the sheet. The fruits,
however, will either rot or dry down to a pile of seeds. So definitely
include a note on their size (length and width). Also flavour, if you get
some ripe ones. Better in your belly, with a good description on the label,
than pressed into mash untasted!&lt;/p&gt;
&lt;p&gt;Note that this protocol reflects the minimum necessary material for a
useful herbarium collection. If you have time and space for more than two
sheets, and you see interesting bits you&amp;rsquo;d like to include, you can always
collect more. Some of our collections include five or six sheets for a
single plant.&lt;/p&gt;
&lt;section class=&#34;footnotes&#34; role=&#34;doc-endnotes&#34;&gt;
&lt;hr&gt;
&lt;ol&gt;
&lt;li id=&#34;fn:1&#34; role=&#34;doc-endnote&#34;&gt;
&lt;p&gt;What I should say here is that flowers have not been found useful by
previous taxonomic research on blackberries. Sadly, previous taxonomic
research on blackberries is quite a mess, and I am prepared to accept
that anything I think I know about this group is completely wrong. &lt;a href=&#34;#fnref:1&#34; class=&#34;footnote-backref&#34; role=&#34;doc-backlink&#34;&gt;&amp;#x21a9;&amp;#xfe0e;&lt;/a&gt;&lt;/p&gt;
&lt;/li&gt;
&lt;/ol&gt;
&lt;/section&gt;
</description>
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    <item>
      <title>Botanical macros from Mer Bleue</title>
      <link>https://plantarum.ca/2013/04/28/botanical-macros-from-mer-bleue/</link>
      <pubDate>Sun, 28 Apr 2013 00:00:00 +0000</pubDate>
      
      <guid>https://plantarum.ca/2013/04/28/botanical-macros-from-mer-bleue/</guid>
      <description>&lt;p&gt;&lt;img src=&#34;https://plantarum.ca/images/Acer_rubrum_TWS2534-crop-1024x677.jpg&#34; alt=&#34;Acer rubrum male flowers shedding pollen&#34; title=&#34;*Acer rubrum* male flowers shedding pollen&#34;&gt;&lt;/p&gt;
&lt;p&gt;It hit 23 Celsius in Ottawa today, so I packed my camera and headed out to &lt;a href=&#34;http://www.canadascapital.gc.ca/places-to-visit/greenbelt/mer-bleue&#34;&gt;Mer Bleue&lt;/a&gt; for my first photo trek of the season. It&amp;rsquo;ll be another week or so before
the spring wildflowers get into full swing, but I came back with a great
preview.&lt;/p&gt;
&lt;p&gt;Red maple flowers before the leaves come out, giving the tree a red halo
that it quite striking against the bare branches. Silver maple, &lt;em&gt;Acer
saccharinum&lt;/em&gt;, flowers are similar, but yellow-green rather than red. They
bloom about a week earlier, but their season is long enough allow for
occasional hybrids to form. The male and female flowers are usually on
separate branches, and young trees may have only one sex or the other.
These blooms were on the big tree at the start of the Mer Bleue boardwalk.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;https://plantarum.ca/images/Acer_rubrum_TWS2531-despecked-678x1024.jpg&#34; alt=&#34;Acer rubrum anthers&#34;&gt;&lt;/p&gt;
&lt;p&gt;The fresh anthers are bright red. They split open to reveal the yellow pollen. As the pollen is shed, the dull red inner surface of the anther remains briefly before the flower falls apart. The shiny spot at the base of the flower is the nectar produced to attract insect pollinators.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;https://plantarum.ca/images/acer_rubrum_TWS2617-despeck-crop-1024x1002.jpg&#34; alt=&#34;Acer rubrum female flowers&#34;&gt;&lt;/p&gt;
&lt;p&gt;Sterile anthers are visible at the base of the female flowers. The tiny ovaries are already shaped like miniature maple keys, surrounded by a swollen nectary. You can see these features with a hand lens, but it&amp;rsquo;s too small for me to get a clear picture with my SLR.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;https://plantarum.ca/images/Acer_rubrum_TWS2624-despecked-678x1024.jpg&#34; alt=&#34;Acer rubrum female flowers&#34;&gt;&lt;/p&gt;
&lt;p&gt;I got a nice view of the female flowers out at the road. There were also some small, apparently all-female trees right at the start of the boardwalk.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;https://plantarum.ca/images/Larix_TWS2555-despeck-678x1024.jpg&#34; alt=&#34;Larix laricinia, spring twig&#34;&gt;&lt;/p&gt;
&lt;p&gt;I&amp;rsquo;ve never stopped to look at young Tamarack cones before. The female cones have a rich pink-red colour, which contrasts nicely against the new green needles. Being deciduous, the needles will be gone by the time the cones mature into the more familiar woody form.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;https://plantarum.ca/images/larix_TWS2561-crop-678x1024.jpg&#34; alt=&#34;Larix laricinia, male cone&#34;&gt;&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;https://plantarum.ca/images/Larix_TWS2575-crop-1024x678.jpg&#34; alt=&#34;Larix laricinia, male cone&#34;&gt;&lt;/p&gt;
&lt;p&gt;The male cones face downwards, and aren&amp;rsquo;t as brightly coloured as the
female. They weren&amp;rsquo;t quite mature today, but they&amp;rsquo;ll probably start
shedding pollen this week.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;https://plantarum.ca/images/erythronium_TWS2601-despecked-678x1024.jpg&#34; alt=&#34;Erythronium americanum&#34;&gt;&lt;/p&gt;
&lt;p&gt;There were a few Trilliums and Bloodroot poking up, but the only showy spring wildflower I found were a handful of Trout Lilies, &lt;em&gt;Erythronium americanum&lt;/em&gt;.&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;https://plantarum.ca/images/carex_pedunculata_TWS2604-e1367200780999-678x1024.jpg&#34; alt=&#34;Carex pedunculata in flower&#34;&gt;&lt;/p&gt;
&lt;p&gt;&lt;em&gt;Carex pedunculata&lt;/em&gt; is one of my favourite spring flowers. It&amp;rsquo;s one of the earliest, starting with or even before species like &lt;em&gt;Carex plantaginea&lt;/em&gt;. The plants are distinctive, with strongly reddened leaf bases, and dark red scales - particularly the staminate ones. You might confuse it with something from section &lt;em&gt;Acrocystis&lt;/em&gt;, like &lt;em&gt;C. pensylvanica&lt;/em&gt;. However, &lt;em&gt;C. pedunculata&lt;/em&gt; has female spikelets on long, drooping peduncles arising low on the plant, quite unlike any of the &lt;em&gt;Acrocystis&lt;/em&gt;. When the fruit matures, the perigynia are pubescent, and can form fleshy elaisomes, another characteristic shared with some of the &lt;em&gt;Acrocystis&lt;/em&gt; species.&lt;/p&gt;
&lt;p&gt;This one was part of a big patch on a small ravine slope, but it&amp;rsquo;s pretty common through the woods here. It&amp;rsquo;s very easy to overlook, though, because its ant-dispersed fruits are shed and gone before the end of May. There was a very delicate little &lt;em&gt;Acrocystis&lt;/em&gt; sedge growing with it. I&amp;rsquo;m not sure what it was, too small for &lt;em&gt;C. pensylvanica&lt;/em&gt; or &lt;em&gt;C. complanata&lt;/em&gt;, so I&amp;rsquo;m guessing &lt;em&gt;C. peckii&lt;/em&gt;.&lt;/p&gt;
&lt;p&gt;Another one of my favourites is Beaked Hazel - &lt;em&gt;Corylus cornuta&lt;/em&gt;.
There was lots of it in the woods today. Another easy-to-miss flower. I
finally got some good pictures of it last year, after trying without
success for many years. Here&amp;rsquo;s one of them:&lt;/p&gt;
&lt;p&gt;&lt;img src=&#34;https://plantarum.ca/images/Cornus_cornuta_TWS_0117-1024x678.jpg&#34; alt=&#34;Corylus cornuta, female flower&#34;&gt;&lt;/p&gt;
&lt;h2 id=&#34;geek-notes&#34;&gt;Geek notes&lt;/h2&gt;
&lt;p&gt;Despite lugging my tripod around with me all day, I only used it once or twice. With the wind blowing, it was not really that helpful. However, I&amp;rsquo;m finally coming to terms with modern technology, I think. I got stuck in a rut where everything I shot was ISO100, on a tripod, stopped down to F40+ to squeeze as much of &amp;lsquo;reality&amp;rsquo; as possible into focus. Working under these restrictions limited my composition, I finally realized. Today, I left the camera on ISO200, and sure enough, the sky &lt;em&gt;did not&lt;/em&gt; fall. I&amp;rsquo;m using a vibration-reduction lens, auto-focus, and a camera-mounted speedlight for fill-flash, and I&amp;rsquo;m quite happy with how sharp the images came out. I switched back to manual focus for the real close-up stuff, and used a pair of lens-mounted R1 speedlights when I needed a little more control of lighting, but that&amp;rsquo;s still less bother than a tripod. What do you think? Let me know how you deal with close-ups of bouncy flowers.&lt;/p&gt;
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